2025
Construction of a randomly barcoded insertional mutant library in the filamentous fungus Trichoderma atroviride
Huberman LB, Villalobos-Escobedo JM, Skerker JM, Shi R, Rico-Ramírez AM, Adams C, Arkin AP, Deutschbauer AM, Glass NL, 2025. Construction of a randomly barcoded insertional mutant library in the filamentous fungus Trichoderma atroviride. bioRxiv 11.30.691285. doi: 10.1101/2025.11.30.691285.
A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing
Huberman LB, Wu VW, Kowbel DJ, Lee J, Daum C, Singan VR, Grigoriev IV, O’Malley RC, Glass NL, 2025. A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing. mBio16(10):e0202325. doi: 10.1128/mbio.02023-25
Celebrating the fifth edition of the International Symposium on Fungal Stress - ISFUS, a decade after its 2014 debut
Alder-Rangel A, Rangel AEA, Casadevall A, Gusa A, Xue C, Boone CM, Hittinger CT, Masuda CA, Olivares-Yañez C, Bell-Pedersen D, Washington EJ, Braus G, Janbon G, Pócsi I, Stajich JE, Dunlap JC, Bennett JW, Heitman J, Lu L, Landi L, Shinohara ML, Del Poeta M, Acheampong MA, Maltz MR, Lorenz MC, Nowrousian M, Glass NL, Broderick NA, Pedrini N, Osherov N, Billmyre RB, Sarrocco S, LeibundGut-Landmann S, Vicente VA, Lin X, Zhao XQ, Bahn YS, Lewis ZA, Rangel DEN, 2025. Celebrating the fifth edition of the International Symposium on Fungal Stress – ISFUS, a decade after its 2014 debut. Fungal Biol. 129(5):101590. doi: 10.1016/j.funbio.2025.101590.
Identification of regions required for allelic specificity at the cell wall remodeling checkpoint in Neurospora crassa
Rico-Ramirez AM, Glass NL, 2025. Identification of regions required for allelic specificity at the cell wall remodeling checkpoint in Neurospora crassa. Genetics 230(2):iyaf062. doi: 10.1093/genetics/iyaf062.
Molecular insights into fungal innate immunity using the Neurospora crassa-Pseudomonas syringae model
Stark FG, Torii-Karch M, Yuvaraj S, Bonometti L, Gladieux P, Glass NL, Krasileva K, 2025. Molecular insights into fungal innate immunity using the Neurospora crassa-Pseudomonas syringae model. bioRxiv 01.22.633611. doi: 10.1101/2025.01.22.633611.
Transcriptomic and genetic analysis reveals a Zn2Cys6 transcription factor specifically required for conidiation in submerged cultures of Thermothelomyces thermophilus
Drescher F, Li Y, Villalobos-Escobedo JM, Haefner S, Huberman LB, Glass NL, 2025.Transcriptomic and genetic analysis reveals a Zn2Cys6 transcription factor specifically required for conidiation in submerged cultures of Thermothelomyces thermophilus. mBio 16(1):e0311124. doi: 10.1128/mbio.03111-24.
2024
Syncytial Assembly Lines; Consequences of multinucleate cellular compartments for fungal protein synthesis
Mayer A, McLaughlin G, Gladfelter A, Glass NL, Mela A, Roper M, 2024. Syncytial Assembly Lines; Consequences of multinucleate cellular compartments for fungal protein synthesis. Results Probl Cell Differ. 71:159-183. doi: 10.1007/978-3-031-37936-9_9.
2023
Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
Villalobos-Escobedo JM, Mercado-Esquivias MB, Adams C, Kauffman WB, Malmstrom RR, Deutschbauer AM, Glass NL, 2023. Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites. PLoS Genet. 19(8):e1010909. doi: 10.1371/journal.pgen.1010909. PMID: 37651474
Permissiveness and competition within and between Neurospora crassa syncytia
Mela AP, Glass NL, 2023. Permissiveness and competition within and between Neurospora crassa syncytia. Genetics 224(4):iyad112. doi: 10.1093/genetics/iyad112.PMID: 37313736.
2022
The future of fungi: threats and opportunities
Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK,
Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, Iliev ID, James TY, Jin H, Klein BS, Kronstad JW, Lorch JM, McGovern V, Mitchell AP, Segre JA, Shapiro RS, Sheppard DC, Sil A, Stajich JE, Stukenbrock EE, Taylor JW, Thompson D, Wright GD, Heitman J, Cowen LE, 2022. The future of fungi: threats and opportunities. G3 12(11):jkac224. doi: 10.1093/g3journal/jkac224.
Gasdermin and gasdermin-like pore-forming proteins in invertebrates, fungi and bacteria
Daskalov A, Glass NL 2022. Gasdermin and gasdermin-like pore-forming proteins in invertebrates, fungi and bacteria. J Mol Biol 434(4):167273. doi: 10.1016/j.jmb.2021.167273. PMID: 34599942.
Microbial ecology: Fungal foes and friends
Glass NL, Rico-Ramirez, 2022. Microbial ecology: Fungal foes and friends. Curr Biol 32(2):R84-R86. doi: 10.1016/j.cub.2021.12.030. PMID: 35077695.
Fungal cell death: The beginning of the end
Rico-Ramirez AM, Goncalves AP, Glass NL, 2022. Fungal cell death: The beginning of the end. Fungal Genet Biol 159:103671. doi: 10.1016.j.fgb.2022.103671. PMID: 35150840.
Transcriptional regulation by the velvet protein VE-1 during asexual development in the fungus Neurospora crassa
Cea-Sánchez S, Corrochano-Luque M, Gutiérrez G, Glass NL, Cánovas D, Corrochano LM, 2022. Transcriptional regulation by the velvet protein VE-1 during asexual development in the fungus Neurospora crassa. mBio 13(4):e0150522. doi: 10.1128/mbio. PMID: 35913159.
A moonlighting function of a chitin polysaccharide monooxygenase, CWR-1, in Neurospora crassa allorecognition.
Detomasi TC, Rico Ramírez AM, Sayler RI, Gonçalves AP, Marletta MA, Glass NL, 2022. A moonlighting function of a chitin polysaccharide monooxygenase, CWR-1, in Neurospora crassa allorecognition. Elife 11:e80459. doi: 10.7554/eLife.80459. PMID: 36040303.
2021
Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing
Huberman LB, Wu VW, Lee J, Daum C, O’Malley RC, Glass NL. Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing. mSphere. 2021 Oct 27;6(5):e0056421. doi: 10.1128/mSphere.00564-21. Epub 2021 Sep 15. PMID: 34523983; PMCID: PMC8550094.
Spray-induced gene silencing for disease control is dependent on the efficiency of pathogen RNA uptake
Qiao L, Lan C, Capriotti L, Ah-Fong A, Nino Sanchez J, Hamby R, Heller J, Zhao H, Glass NL, Judelson HS, Mezzetti B, Niu D, Jin H. Spray-induced gene silencing for disease control is dependent on the efficiency of pathogen RNA uptake. Plant Biotechnol J. 2021 Sep;19(9):1756-1768. doi: 10.1111/pbi.13589. Epub 2021 May 4. PMID: 33774895; PMCID: PMC8428832.
Microevolution in the pansecondary metabolome of Aspergillus flavus and its potential macroevolutionary implications for filamentous fungi
Drott MT, Rush TA, Satterlee TR, Giannone RJ, Abraham PE, Greco C, Venkatesh N, Skerker JM, Glass NL, Labbé JL, Milgroom MG, Keller NP. Microevolution in the pansecondary metabolome of Aspergillus flavus and its potential macroevolutionary implications for filamentous fungi. Proc Natl Acad Sci U S A. 2021 May 25;118(21):e2021683118. doi: 10.1073/pnas.2021683118. PMID: 34016748; PMCID: PMC8166093.
DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
Huberman LB, Wu VW, Kowbel DJ, Lee J, Daum C, Grigoriev IV, O’Malley RC, Glass NL. DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus. Proc Natl Acad Sci U S A. 2021 Mar 30;118(13):e2009501118. doi: 10.1073/pnas.2009501118. PMID: 33753477; PMCID: PMC8020665.
The Predicted Mannosyltransferase GT69-2 Antagonizes RFW-1 To Regulate Cell Fusion in Neurospora crassa
Li Y, Heller J, Gonçalves AP, Glass NL. The Predicted Mannosyltransferase GT69-2 Antagonizes RFW-1 To Regulate Cell Fusion in Neurospora crassa. mBio. 2021 Mar 16;12(2):e00307-21. doi: 10.1128/mBio.00307-21. PMID: 33727349; PMCID: PMC8092235.
2020
Syncytia in Fungi
Mela AP, Rico-Ramírez AM, Glass NL. Syncytia in Fungi. Cells. 2020 Oct 8;9(10):2255. doi: 10.3390/cells9102255. PMID: 33050028; PMCID: PMC7600787.
Conflict, Competition, and Cooperation Regulate Social Interactions in Filamentous Fungi
Gonçalves AP, Heller J, Rico-Ramírez AM, Daskalov A, Rosenfield G, Glass NL. Conflict, Competition, and Cooperation Regulate Social Interactions in Filamentous Fungi. Annu Rev Microbiol. 2020 Sep 8;74:693-712. doi: 10.1146/annurev-micro-012420-080905. Epub 2020 Jul 20. PMID: 32689913.
Molecular characterization of a fungal gasdermin-like protein
Daskalov A, Mitchell PS, Sandstrom A, Vance RE, Glass NL. Molecular characterization of a fungal gasdermin-like protein. Proc Natl Acad Sci U S A. 2020 Aug 4;117(31):18600-18607. doi: 10.1073/pnas.2004876117. Epub 2020 Jul 23. PMID: 32703806; PMCID: PMC7414189.
Quantitative Proteome Profiling Reveals Cellobiose-Dependent Protein Processing and Export Pathways for the Lignocellulolytic Response in Neurospora crassa
Liu D, Liu Y, Zhang D, Chen X, Liu Q, Xiong B, Zhang L, Wei L, Wang Y, Fang H, Liesche J, Wei Y, Glass NL, Hao Z, Chen S. Quantitative Proteome Profiling Reveals Cellobiose-Dependent Protein Processing and Export Pathways for the Lignocellulolytic Response in Neurospora crassa. Appl Environ Microbiol. 2020 Jul 20;86(15):e00653-20. doi: 10.1128/AEM.00653-20. PMID: 32471912; PMCID: PMC7376555.
The Frequency of Sex: Population Genomics Reveals Differences in Recombination and Population Structure of the Aflatoxin-Producing Fungus Aspergillus flavus
Drott MT, Satterlee TR, Skerker JM, Pfannenstiel BT, Glass NL, Keller NP, Milgroom MG. The Frequency of Sex: Population Genomics Reveals Differences in Recombination and Population Structure of the Aflatoxin-Producing Fungus Aspergillus flavus. mBio. 2020 Jul 14;11(4):e00963-20. doi: 10.1128/mBio.00963-20. PMID: 32665272; PMCID: PMC7360929.
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
Wu VW, Thieme N, Huberman LB, Dietschmann A, Kowbel DJ, Lee J, Calhoun S, Singan VR, Lipzen A, Xiong Y, Monti R, Blow MJ, O’Malley RC, Grigoriev IV, Benz JP, Glass NL. The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus. Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6003-6013. doi: 10.1073/pnas.1915611117. Epub 2020 Feb 28. PMID: 32111691; PMCID: PMC7084071.
Fungal social barriers: to fuse, or not to fuse, that is the question
Gonçalves AP, Glass NL. Fungal social barriers: to fuse, or not to fuse, that is the question. Commun Integr Biol. 2020 Mar 16;13(1):39-42. doi: 10.1080/19420889.2020.1740554. PMID: 32313605; PMCID: PMC7159315.
WHI-2 Regulates Intercellular Communication via a MAP Kinase Signaling Complex
Gonçalves AP, Chow KM, Cea-Sánchez S, Glass NL. WHI-2 Regulates Intercellular Communication via a MAP Kinase Signaling Complex. Front Microbiol. 2020 Jan 22;10:3162. doi: 10.3389/fmicb.2019.03162. PMID: 32038591; PMCID: PMC6987382.
2019
The Fungal Cell Death Regulator czt-1 Is Allelic to acr-3
Gonçalves AP, McCluskey K, Glass NL, Videira A. The Fungal Cell Death Regulator czt-1 Is Allelic to acr-3. J Fungi (Basel). 2019 Dec 6;5(4):114. doi: 10.3390/jof5040114. PMID: 31817728; PMCID: PMC6958467.
Programmed Cell Death in Neurospora crassa Is Controlled by the Allorecognition Determinant rcd-1
Daskalov A, Gladieux P, Heller J, Glass NL. Programmed Cell Death in Neurospora crassa Is Controlled by the Allorecognition Determinant rcd-1. Genetics. 2019 Dec;213(4):1387-1400. doi: 10.1534/genetics.119.302617. Epub 2019 Oct 21. PMID: 31636083; PMCID: PMC6893366.
Allorecognition upon Fungal Cell-Cell Contact Determines Social Cooperation and Impacts the Acquisition of Multicellularity
Gonçalves AP, Heller J, Span EA, Rosenfield G, Do HP, Palma-Guerrero J, Requena N, Marletta MA, Glass NL. Allorecognition upon Fungal Cell-Cell Contact Determines Social Cooperation and Impacts the Acquisition of Multicellularity. Curr Biol. 2019 Sep 23;29(18):3006-3017.e3. doi: 10.1016/j.cub.2019.07.060. Epub 2019 Aug 29. PMID: 31474536.
Identification and manipulation of Neurospora crassa genes involved in sensitivity to furfural
Feldman D, Kowbel DJ, Cohen A, Glass NL, Hadar Y, Yarden O. Identification and manipulation of Neurospora crassa genes involved in sensitivity to furfural. Biotechnol Biofuels. 2019 Sep 4;12:210. doi: 10.1186/s13068-019-1550-4. PMID: 31508149; PMCID: PMC6724289.
Integration of Self and Non-self Recognition Modulates Asexual Cell-to-Cell Communication in Neurospora crassa
Fischer MS, Jonkers W, Glass NL. Integration of Self and Non-self Recognition Modulates Asexual Cell-to-Cell Communication in Neurospora crassa. Genetics. 2019 Apr;211(4):1255-1267. doi: 10.1534/genetics.118.301780. Epub 2019 Feb 4. PMID: 30718271; PMCID: PMC6456313.
Communicate and Fuse: How Filamentous Fungi Establish and Maintain an Interconnected Mycelial Network
Fischer MS, Glass NL. Communicate and Fuse: How Filamentous Fungi Establish and Maintain an Interconnected Mycelial Network. Front Microbiol. 2019 Mar 29;10:619. doi: 10.3389/fmicb.2019.00619. PMID: 31001214; PMCID: PMC6455062.
2018
The power of discussion: Support for women at the fungal Gordon Research Conference
Riquelme M, Aime MC, Branco S, Brand A, Brown A, Glass NL, Kahmann R, Momany M, Rokas A, Trail F. The power of discussion: Support for women at the fungal Gordon Research Conference. Fungal Genet Biol. 2018 Dec;121:65-67. doi: 10.1016/j.fgb.2018.09.007. Epub 2018 Sep 24. PMID: 30261275.
Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa
Fischer MS, Wu VW, Lee JE, O’Malley RC, Glass NL. Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa. Genetics. 2018 Jun;209(2):489-506. doi: 10.1534/genetics.118.300904. Epub 2018 Apr 20. PMID: 29678830; PMCID: PMC5972422.
Synthetic Gene Network with Positive Feedback Loop Amplifies Cellulase Gene Expression in Neurospora crassa
Matsu-Ura T, Dovzhenok AA, Coradetti ST, Subramanian KR, Meyer DR, Kwon JJ, Kim C, Salomonis N, Glass NL, Lim S, Hong CI. Synthetic Gene Network with Positive Feedback Loop Amplifies Cellulase Gene Expression in Neurospora crassa. ACS Synth Biol. 2018 May 18;7(5):1395-1405. doi: 10.1021/acssynbio.8b00011. Epub 2018 Apr 20. PMID: 29625007.
NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi
Heller J, Clavé C, Gladieux P, Saupe SJ, Glass NL. NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2292-E2301. doi: 10.1073/pnas.1719705115. Epub 2018 Feb 20. PMID: 29463729; PMCID: PMC5878007.
The major cellulases CBH-1 and CBH-2 of Neurospora crassa rely on distinct ER cargo adaptors for efficient ER-exit
Starr TL, Gonçalves AP, Meshgin N, Glass NL. The major cellulases CBH-1 and CBH-2 of Neurospora crassa rely on distinct ER cargo adaptors for efficient ER-exit. Mol Microbiol. 2018 Jan;107(2):229-248. doi: 10.1111/mmi.13879. Epub 2017 Dec 11. PMID: 29131484.
2017
Near-Cognate Codons Contribute Complexity to Translation Regulation
Glass NL. Near-Cognate Codons Contribute Complexity to Translation Regulation. mBio. 2017 Nov 7;8(6):e01820-17. doi: 10.1128/mBio.01820-17. PMID: 29114030; PMCID: PMC5676045.
A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatus
Feldman D, Kowbel DJ, Glass NL, Yarden O, Hadar Y. A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatus. Sci Rep. 2017 Nov 6;7(1):14553. doi: 10.1038/s41598-017-15112-2. Erratum in: Sci Rep. 2018 Mar 6;8(1):4213. doi: 10.1038/s41598-018-21904-x. PMID: 29109463; PMCID: PMC5674062.
Network of nutrient-sensing pathways and a conserved kinase cascade integrate osmolarity and carbon sensing in Neurospora crassa
Huberman LB, Coradetti ST, Glass NL. Network of nutrient-sensing pathways and a conserved kinase cascade integrate osmolarity and carbon sensing in Neurospora crassa. Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8665-E8674. doi: 10.1073/pnas.1707713114. Epub 2017 Sep 25. PMID: 28973881; PMCID: PMC5642704.
Regulated Forms of Cell Death in Fungi
Gonçalves AP, Heller J, Daskalov A, Videira A, Glass NL. Regulated Forms of Cell Death in Fungi. Front Microbiol. 2017 Sep 21;8:1837. doi: 10.3389/fmicb.2017.01837. PMID: 28983298; PMCID: PMC5613156.
Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa
Samal A, Craig JP, Coradetti ST, Benz JP, Eddy JA, Price ND, Glass NL. Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa. Biotechnol Biofuels. 2017 Sep 21;10:225. doi: 10.1186/s13068-017-0901-2. PMID: 28947916; PMCID: PMC5609067.
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa
Thieme N, Wu VW, Dietschmann A, Salamov AA, Wang M, Johnson J, Singan VR, Grigoriev IV, Glass NL, Somerville CR, Benz JP. The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa. Biotechnol Biofuels. 2017 Jun 12;10:149. doi: 10.1186/s13068-017-0807-z. PMID: 28616073; PMCID: PMC5469009.
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
Xiong Y, Wu VW, Lubbe A, Qin L, Deng S, Kennedy M, Bauer D, Singan VR, Barry K, Northen TR, Grigoriev IV, Glass NL. A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. PLoS Genet. 2017 May 3;13(5):e1006737. doi: 10.1371/journal.pgen.1006737. PMID: 28467421; PMCID: PMC5435353.
Molecular Mechanisms Regulating Cell Fusion and Heterokaryon Formation in Filamentous Fungi
Daskalov A, Heller J, Herzog S, Fleißner A, Glass NL. Molecular Mechanisms Regulating Cell Fusion and Heterokaryon Formation in Filamentous Fungi. Microbiol Spectr. 2017 Mar;5(2):10.1128/microbiolspec.funk-0015-2016. doi: 10.1128/microbiolspec.FUNK-0015-2016. PMID: 28256191; PMCID: PMC11687462.
Deciphering the Regulatory Network between the SREBP Pathway and Protein Secretion in Neurospora crassa
Qin L, Wu VW, Glass NL. Deciphering the Regulatory Network between the SREBP Pathway and Protein Secretion in Neurospora crassa. mBio. 2017 Apr 18;8(2):e00233-17. doi: 10.1128/mBio.00233-17. PMID: 28420736; PMCID: PMC5395666.
Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes
Wu VW, Dana CM, Iavarone AT, Clark DS, Glass NL. Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes. mBio. 2017 Jan 17;8(1):e02231-16. doi: 10.1128/mBio.02231-16. PMID: 28096492; PMCID: PMC5241404.
2016
The Enigmatic Universe of the Herbivore Gut
Glass NL. The Enigmatic Universe of the Herbivore Gut. Trends Biochem Sci. 2016 Jul;41(7):561-562. doi: 10.1016/j.tibs.2016.05.007. Epub 2016 May 30. PMID: 27257096.
Regulation of the lignocellulolytic response in filamentous fungi
Huberman, L.B., Liu, J., Qin, L., and Glass, N.L. Regulation of the lignocellulolytic response in filamentous fungi. Fungal Biology Reviews. 2016;30: 101-111.
The SEB-1 Transcription Factor Binds to the STRE Motif in Neurospora crassa and Regulates a Variety of Cellular Processes Including the Stress Response and Reserve Carbohydrate Metabolism
Freitas FZ, Virgilio S, Cupertino FB, Kowbel DJ, Fioramonte M, Gozzo FC, Glass NL, Bertolini MC. The SEB-1 Transcription Factor Binds to the STRE Motif in Neurospora crassa and Regulates a Variety of Cellular Processes Including the Stress Response and Reserve Carbohydrate Metabolism. G3 (Bethesda). 2016 May 3;6(5):1327-43. doi: 10.1534/g3.116.028506. PMID: 26994287; PMCID: PMC4856084.
Characterization of Greenbeard Genes Involved in Long-Distance Kind Discrimination in a Microbial Eukaryote
Heller J, Zhao J, Rosenfield G, Kowbel DJ, Gladieux P, Glass NL. Characterization of Greenbeard Genes Involved in Long-Distance Kind Discrimination in a Microbial Eukaryote. PLoS Biol. 2016 Apr 14;14(4):e1002431. doi: 10.1371/journal.pbio.1002431. PMID: 27077707; PMCID: PMC4831770.
Neurospora crassa transcriptomics reveals oxidative stress and plasma membrane homeostasis biology genes as key targets in response to chitosan
Lopez-Moya F, Kowbel D, Nueda MJ, Palma-Guerrero J, Glass NL, Lopez-Llorca LV. Neurospora crassa transcriptomics reveals oxidative stress and plasma membrane homeostasis biology genes as key targets in response to chitosan. Mol Biosyst. 2016 Feb;12(2):391-403. doi: 10.1039/c5mb00649j. PMID: 26694141; PMCID: PMC4729629.
2015
Direct target network of the Neurospora crassa plant cell wall deconstruction regulators CLR-1, CLR-2, and XLR-1
Craig JP, Coradetti ST, Starr TL, Glass NL. Direct target network of the Neurospora crassa plant cell wall deconstruction regulators CLR-1, CLR-2, and XLR-1. mBio. 2015 Oct 13;6(5):e01452-15. doi: 10.1128/mBio.01452-15. PMID: 26463163; PMCID: PMC4620465.
Identification of Allorecognition Loci in Neurospora crassa by Genomics and Evolutionary Approaches
Zhao J, Gladieux P, Hutchison E, Bueche J, Hall C, Perraudeau F, Glass NL. Identification of Allorecognition Loci in Neurospora crassa by Genomics and Evolutionary Approaches. Mol Biol Evol. 2015 Sep;32(9):2417-32. doi: 10.1093/molbev/msv125. Epub 2015 May 28. PMID: 26025978; PMCID: PMC4540973.
Deletion of homologs of the SREBP pathway results in hyper-production of cellulases in Neurospora crassa and Trichoderma reesei
Reilly MC, Qin L, Craig JP, Starr TL, Glass NL. Deletion of homologs of the SREBP pathway results in hyper-production of cellulases in Neurospora crassa and Trichoderma reesei. Biotechnol Biofuels. 2015 Aug 19;8:121. doi: 10.1186/s13068-015-0297-9. PMID: 26288653; PMCID: PMC4539670.
Chemotropism and Cell Fusion in Neurospora crassa Relies on the Formation of Distinct Protein Complexes by HAM-5 and a Novel Protein HAM-14
Jonkers W, Fischer MS, Do HP, Starr TL, Glass NL. Chemotropism and Cell Fusion in Neurospora crassa Relies on the Formation of Distinct Protein Complexes by HAM-5 and a Novel Protein HAM-14. Genetics. 2016 May;203(1):319-34. doi: 10.1534/genetics.115.185348. Epub 2016 Mar 30. PMID: 27029735; PMCID: PMC4858782.
Detoxification of 5-hydroxymethylfurfural by the Pleurotus ostreatus lignolytic enzymes aryl alcohol oxidase and dehydrogenase
Feldman D, Kowbel DJ, Glass NL, Yarden O, Hadar Y. Detoxification of 5-hydroxymethylfurfural by the Pleurotus ostreatus lignolytic enzymes aryl alcohol oxidase and dehydrogenase. Biotechnol Biofuels. 2015 Apr 11;8:63. doi: 10.1186/s13068-015-0244-9. PMID: 25897324; PMCID: PMC4403834.
Identification and characterization of LFD-2, a predicted fringe protein required for membrane integrity during cell fusion in neurospora crassa
Palma-Guerrero J, Zhao J, Gonçalves AP, Starr TL, Glass NL. Identification and characterization of LFD-2, a predicted fringe protein required for membrane integrity during cell fusion in neurospora crassa. Eukaryot Cell. 2015 Mar;14(3):265-77. doi: 10.1128/EC.00233-14. Epub 2015 Jan 16. PMID: 25595444; PMCID: PMC4346563.
Transcription profiling of the Neurospora crassa response to a group of synthetic (thio)xanthones and a natural acetophenone
Pedro Gonçalves A, Silva N, Oliveira C, Kowbel DJ, Glass NL, Kijjoa A, Palmeira A, Sousa E, Pinto M, Videira A. Transcription profiling of the Neurospora crassa response to a group of synthetic (thio)xanthones and a natural acetophenone. Genom Data. 2015 Feb 20;4:26-32. doi: 10.1016/j.gdata.2015.02.001. PMID: 26484172; PMCID: PMC4535624.
Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels
Li X, Yu VY, Lin Y, Chomvong K, Estrela R, Park A, Liang JM, Znameroski EA, Feehan J, Kim SR, Jin YS, Glass NL, Cate JH. Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. Elife. 2015 Feb 3;4:e05896. doi: 10.7554/eLife.05896. PMID: 25647728; PMCID: PMC4338637.
2014
Neurospora crassa: looking back and looking forward at a model microbe
Roche CM, Loros JJ, McCluskey K, Glass NL. Neurospora crassa: looking back and looking forward at a model microbe. Am J Bot. 2014 Dec;101(12):2022-35. doi: 10.3732/ajb.1400377. Epub 2014 Nov 16. PMID: 25480699.
The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation
Xiong Y, Coradetti ST, Li X, Gritsenko MA, Clauss T, Petyuk V, Camp D, Smith R, Cate JHD, Yang F, Glass NL. The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation. Fungal Genet Biol. 2014 Nov;72:21-33. doi: 10.1016/j.fgb.2014.05.005. Epub 2014 May 29. PMID: 24881580; PMCID: PMC4247816.
HAM-5 functions as a MAP kinase scaffold during cell fusion in Neurospora crassa
Jonkers W, Leeder AC, Ansong C, Wang Y, Yang F, Starr TL, Camp DG 2nd, Smith RD, Glass NL. HAM-5 functions as a MAP kinase scaffold during cell fusion in Neurospora crassa. PLoS Genet. 2014 Nov 20;10(11):e1004783. doi: 10.1371/journal.pgen.1004783. PMID: 25412208; PMCID: PMC4238974.
Transcriptional interference by antisense RNA is required for circadian clock function
Xue Z, Ye Q, Anson SR, Yang J, Xiao G, Kowbel D, Glass NL, Crosthwaite SK, Liu Y. Transcriptional interference by antisense RNA is required for circadian clock function. Nature. 2014 Oct 30;514(7524):650-3. doi: 10.1038/nature13671. Epub 2014 Aug 17. PMID: 25132551; PMCID: PMC4214883.
VIB1, a link between glucose signaling and carbon catabolite repression, is essential for plant cell wall degradation by Neurospora crassa
Xiong Y, Sun J, Glass NL. VIB1, a link between glucose signaling and carbon catabolite repression, is essential for plant cell wall degradation by Neurospora crassa. PLoS Genet. 2014 Aug 21;10(8):e1004500. doi: 10.1371/journal.pgen.1004500. PMID: 25144221; PMCID: PMC4140635.
Engineering the filamentous fungus Neurospora crassa for lipid production from lignocellulosic biomass
Roche CM, Glass NL, Blanch HW, Clark DS. Engineering the filamentous fungus Neurospora crassa for lipid production from lignocellulosic biomass. Biotechnol Bioeng. 2014 Jun;111(6):1097-107. doi: 10.1002/bit.25211. Epub 2014 Apr 3. PMID: 24700367.
Plant cell wall-degrading enzymes and their secretion in plant-pathogenic fungi
Kubicek CP, Starr TL, Glass NL. Plant cell wall-degrading enzymes and their secretion in plant-pathogenic fungi. Annu Rev Phytopathol. 2014;52:427-51. doi: 10.1146/annurev-phyto-102313-045831. Epub 2014 Jun 16. PMID: 25001456.
Identification and characterization of LFD1, a novel protein involved in membrane merger during cell fusion in Neurospora crassa
Palma-Guerrero J, Leeder AC, Welch J, Glass NL. Identification and characterization of LFD1, a novel protein involved in membrane merger during cell fusion in Neurospora crassa. Mol Microbiol. 2014 Apr;92(1):164-82. doi: 10.1111/mmi.12545. Epub 2014 Mar 6. PMID: 24673848.
CZT-1 is a novel transcription factor controlling cell death and natural drug resistance in Neurospora crassa
Gonçalves AP, Hall C, Kowbel DJ, Glass NL, Videira A. CZT-1 is a novel transcription factor controlling cell death and natural drug resistance in Neurospora crassa. G3 (Bethesda). 2014 Apr 8;4(6):1091-102. doi: 10.1534/g3.114.011312. PMID: 24717808; PMCID: PMC4065252.
Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates
Ellison CE, Kowbel D, Glass NL, Taylor JW, Brem RB. Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates. mBio. 2014 Apr 1;5(2):e01046-13. doi: 10.1128/mBio.01046-13. PMID: 24692637; PMCID: PMC3977361.
Evidence for transceptor function of cellodextrin transporters in Neurospora crassa
Znameroski EA, Li X, Tsai JC, Galazka JM, Glass NL, Cate JH. Evidence for transceptor function of cellodextrin transporters in Neurospora crassa. J Biol Chem. 2014 Jan 31;289(5):2610-9. doi: 10.1074/jbc.M113.533273. Epub 2013 Dec 16. PMID: 24344125; PMCID: PMC3908395.
A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations
Benz JP, Chau BH, Zheng D, Bauer S, Glass NL, Somerville CR. A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations. Mol Microbiol. 2014 Jan;91(2):275-99. doi: 10.1111/mmi.12459. Epub 2013 Dec 4. PMID: 24224966; PMCID: PMC3900418.
2013
Early colony establishment in Neurospora crassa requires a MAP kinase regulatory network
Leeder AC, Jonkers W, Li J, Glass NL. Early colony establishment in Neurospora crassa requires a MAP kinase regulatory network. Genetics. 2013 Nov;195(3):883-98. doi: 10.1534/genetics.113.156984. Epub 2013 Sep 13. PMID: 24037267; PMCID: PMC3813871.
Physiological role of Acyl coenzyme A synthetase homologs in lipid metabolism in Neurospora crassa
Roche CM, Blanch HW, Clark DS, Glass NL. Physiological role of Acyl coenzyme A synthetase homologs in lipid metabolism in Neurospora crassa. Eukaryot Cell. 2013 Sep;12(9):1244-57. doi: 10.1128/EC.00079-13. Epub 2013 Jul 19. PMID: 23873861; PMCID: PMC3811560.
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
Coradetti ST, Xiong Y, Glass NL. Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. Microbiologyopen. 2013 Aug;2(4):595-609. doi: 10.1002/mbo3.94. Epub 2013 Jun 14. PMID: 23766336; PMCID: PMC3948607.
Nuclear dynamics in a fungal chimera
Roper M, Simonin A, Hickey PC, Leeder A, Glass NL. Nuclear dynamics in a fungal chimera. Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12875-80. doi: 10.1073/pnas.1220842110. Epub 2013 Jul 16. PMID: 23861490; PMCID: PMC3740868.
Genome wide association identifies novel loci involved in fungal communication
Palma-Guerrero J, Hall CR, Kowbel D, Welch J, Taylor JW, Brem RB, Glass NL. Genome wide association identifies novel loci involved in fungal communication. PLoS Genet. 2013;9(8):e1003669. doi: 10.1371/journal.pgen.1003669. Epub 2013 Aug 1. PMID: 23935534; PMCID: PMC3731230.
Plant cell wall deconstruction by ascomycete fungi
Glass NL, Schmoll M, Cate JH, Coradetti S. Plant cell wall deconstruction by ascomycete fungi. Annu Rev Microbiol. 2013;67:477-98. doi: 10.1146/annurev-micro-092611-150044. Epub 2013 Jun 28. PMID: 23808333.
Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction
Znameroski EA, Glass NL. Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction. Biotechnol Biofuels. 2013 Jan 22;6(1):6. doi: 10.1186/1754-6834-6-6. PMID: 23339486; PMCID: PMC3598899.
2012
Physiological significance of network organization in fungi
Simonin A, Palma-Guerrero J, Fricker M, Glass NL. Physiological significance of network organization in fungi. Eukaryot Cell. 2012 Nov;11(11):1345-52. doi: 10.1128/EC.00213-12. Epub 2012 Sep 7. PMID: 22962278; PMCID: PMC3486018.
Diversification of a protein kinase cascade: IME-2 is involved in nonself recognition and programmed cell death in Neurospora crassa
Hutchison EA, Bueche JA, Glass NL. Diversification of a protein kinase cascade: IME-2 is involved in nonself recognition and programmed cell death in Neurospora crassa. Genetics. 2012 Oct;192(2):467-82. doi: 10.1534/genetics.112.142612. Epub 2012 Jul 18. PMID: 22813893; PMCID: PMC3454877.
Cooperation among germinating spores facilitates the growth of the fungus, Neurospora crassa
Richard F, Glass NL, Pringle A. Cooperation among germinating spores facilitates the growth of the fungus, Neurospora crassa. Biol Lett. 2012 Jun 23;8(3):419-22. doi: 10.1098/rsbl.2011.1141. Epub 2012 Jan 18. PMID: 22258449; PMCID: PMC3367758.
Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi
Coradetti ST, Craig JP, Xiong Y, Shock T, Tian C, Glass NL. Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc Natl Acad Sci U S A. 2012 May 8;109(19):7397-402. doi: 10.1073/pnas.1200785109. Epub 2012 Apr 24. PMID: 22532664; PMCID: PMC3358856.
Deciphering transcriptional regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa
Sun J, Tian C, Diamond S, Glass NL. Deciphering transcriptional regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa. Eukaryot Cell. 2012 Apr;11(4):482-93. doi: 10.1128/EC.05327-11. Epub 2012 Feb 17. PMID: 22345350; PMCID: PMC3318299.
Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins
Znameroski EA, Coradetti ST, Roche CM, Tsai JC, Iavarone AT, Cate JH, Glass NL. Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins. Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6012-7. doi: 10.1073/pnas.1118440109. Epub 2012 Apr 2. PMID: 22474347; PMCID: PMC3341005.
Unravelling the molecular basis for light modulated cellulase gene expression - the role of photoreceptors in Neurospora crassa
Schmoll M, Tian C, Sun J, Tisch D, Glass NL. Unravelling the molecular basis for light modulated cellulase gene expression – the role of photoreceptors in Neurospora crassa. BMC Genomics. 2012 Mar 31;13:127. doi: 10.1186/1471-2164-13-127. PMID: 22462823; PMCID: PMC3364853.
2011
Modulation of fungal sensitivity to staurosporine by targeting proteins identified by transcriptional profiling
Fernandes AS, Gonçalves AP, Castro A, Lopes TA, Gardner R, Glass NL, Videira A. Modulation of fungal sensitivity to staurosporine by targeting proteins identified by transcriptional profiling. Fungal Genet Biol. 2011 Dec;48(12):1130-8. doi: 10.1016/j.fgb.2011.09.004. Epub 2011 Oct 5. PMID: 22001288; PMCID: PMC3230747.
Identification of the CRE-1 cellulolytic regulon in Neurospora crassa
Sun J, Glass NL. Identification of the CRE-1 cellulolytic regulon in Neurospora crassa. PLoS One. 2011;6(9):e25654. doi: 10.1371/journal.pone.0025654. Epub 2011 Sep 29. PMID: 21980519; PMCID: PMC3183063.
Array CGH phylogeny: how accurate are comparative genomic hybridization-based trees?
Gilbert LB, Kasuga T, Glass NL, Taylor JW. Array CGH phylogeny: how accurate are comparative genomic hybridization-based trees? BMC Genomics. 2011 Oct 6;12:487. doi: 10.1186/1471-2164-12-487. PMID: 21978207; PMCID: PMC3206521.
Nuclear and genome dynamics in multinucleate ascomycete fungi
Roper M, Ellison C, Taylor JW, Glass NL. Nuclear and genome dynamics in multinucleate ascomycete fungi. Curr Biol. 2011 Sep 27;21(18):R786-93. doi: 10.1016/j.cub.2011.06.042. PMID: 21959169; PMCID: PMC3184236.
The social network: deciphering fungal language
Leeder AC, Palma-Guerrero J, Glass NL. The social network: deciphering fungal language. Nat Rev Microbiol. 2011 Jun;9(6):440-51. doi: 10.1038/nrmicro2580. PMID: 21572459.
Exploring the bZIP transcription factor regulatory network in Neurospora crassa
Tian C, Li J, Glass NL. Exploring the bZIP transcription factor regulatory network in Neurospora crassa. Microbiology (Reading). 2011 Mar;157(Pt 3):747-759. doi: 10.1099/mic.0.045468-0. Epub 2010 Nov 16. PMID: 21081763; PMCID: PMC3081083.
Population genomics and local adaptation in wild isolates of a model microbial eukaryote
Ellison CE, Hall C, Kowbel D, Welch J, Brem RB, Glass NL, Taylor JW. Population genomics and local adaptation in wild isolates of a model microbial eukaryote. Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2831-6. doi: 10.1073/pnas.1014971108. Epub 2011 Jan 31. PMID: 21282627; PMCID: PMC3041088.
Expression and characterization of the Neurospora crassa endoglucanase GH5-1
Sun J, Phillips CM, Anderson CT, Beeson WT, Marletta MA, Glass NL. Expression and characterization of the Neurospora crassa endoglucanase GH5-1. Protein Expr Purif. 2011 Feb;75(2):147-54. doi: 10.1016/j.pep.2010.08.016. Epub 2010 Sep 6. PMID: 20826217.
Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation
Ha SJ, Galazka JM, Kim SR, Choi JH, Yang X, Seo JH, Glass NL, Cate JH, Jin YS. Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):504-9. doi: 10.1073/pnas.1010456108. Epub 2010 Dec 27. PMID: 21187422; PMCID: PMC3021080.
2010
Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a β-glucosidase in Saccharomyces cerevisiae
Li S, Du J, Sun J, Galazka JM, Glass NL, Cate JH, Yang X, Zhao H. Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a β-glucosidase in Saccharomyces cerevisiae. Mol Biosyst. 2010 Nov;6(11):2129-32. doi: 10.1039/c0mb00063a. Epub 2010 Sep 27. PMID: 20871937.
Evolution and diversity of a fungal self/nonself recognition locus
Hall C, Welch J, Kowbel DJ, Glass NL. Evolution and diversity of a fungal self/nonself recognition locus. PLoS One. 2010 Nov 19;5(11):e14055. doi: 10.1371/journal.pone.0014055. PMID: 21124910; PMCID: PMC2988816.
Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa
Simonin AR, Rasmussen CG, Yang M, Glass NL. Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa. Fungal Genet Biol. 2010 Oct;47(10):855-68. doi: 10.1016/j.fgb.2010.06.010. Epub 2010 Jul 1. PMID: 20601042.
Cellodextrin transport in yeast for improved biofuel production
Galazka JM, Tian C, Beeson WT, Martinez B, Glass NL, Cate JH. Cellodextrin transport in yeast for improved biofuel production. Science. 2010 Oct 1;330(6000):84-6. doi: 10.1126/science.1192838. Epub 2010 Sep 9. PMID: 20829451.
Temporal and spatial regulation of gene expression during asexual development of Neurospora crassa
Greenwald CJ, Kasuga T, Glass NL, Shaw BD, Ebbole DJ, Wilkinson HH. Temporal and spatial regulation of gene expression during asexual development of Neurospora crassa. Genetics. 2010 Dec;186(4):1217-30. doi: 10.1534/genetics.110.121780. Epub 2010 Sep 27. PMID: 20876563; PMCID: PMC2998306.
Meiotic regulators Ndt80 and ime2 have different roles in Saccharomyces and Neurospora
Hutchison EA, Glass NL. Meiotic regulators Ndt80 and ime2 have different roles in Saccharomyces and Neurospora. Genetics. 2010 Aug;185(4):1271-82. doi: 10.1534/genetics.110.117184. Epub 2010 Jun 2. PMID: 20519745; PMCID: PMC2927755.
Rotenone enhances the antifungal properties of staurosporine
Castro A, Lemos C, Falcão A, Fernandes AS, Glass NL, Videira A. Rotenone enhances the antifungal properties of staurosporine. Eukaryot Cell. 2010 Jun;9(6):906-14. doi: 10.1128/EC.00003-10. Epub 2010 Apr 30. PMID: 20435699; PMCID: PMC2901650.
2009
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
Tian C, Beeson WT, Iavarone AT, Sun J, Marletta MA, Cate JH, Glass NL. Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22157-62. doi: 10.1073/pnas.0906810106. Epub 2009 Dec 15. PMID: 20018766; PMCID: PMC2794032.
Oscillatory recruitment of signaling proteins to cell tips promotes coordinated behavior during cell fusion
Fleissner A, Leeder AC, Roca MG, Read ND, Glass NL. Oscillatory recruitment of signaling proteins to cell tips promotes coordinated behavior during cell fusion. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19387-92. doi: 10.1073/pnas.0907039106. Epub 2009 Nov 2. PMID: 19884508; PMCID: PMC2780775.
Transcriptional profiling and functional analysis of heterokaryon incompatibility in Neurospora crassa reveals that reactive oxygen species, but not metacaspases, are associated with programmed cell death
Hutchison E, Brown S, Tian C, Glass NL. Transcriptional profiling and functional analysis of heterokaryon incompatibility in Neurospora crassa reveals that reactive oxygen species, but not metacaspases, are associated with programmed cell death. Microbiology (Reading). 2009 Dec;155(Pt 12):3957-3970. doi: 10.1099/mic.0.032284-0. Epub 2009 Aug 20. PMID: 19696111; PMCID: PMC2889424.
Transcriptional analysis of the response of Neurospora crassa to phytosphingosine reveals links to mitochondrial function
Videira A, Kasuga T, Tian C, Lemos C, Castro A, Glass NL. Transcriptional analysis of the response of Neurospora crassa to phytosphingosine reveals links to mitochondrial function. Microbiology (Reading). 2009 Sep;155(Pt 9):3134-3141. doi: 10.1099/mic.0.029710-0. Epub 2009 Jun 11. PMID: 19520721; PMCID: PMC2888170.
Relationship between phylogenetic distribution and genomic features in Neurospora crassa
Kasuga T, Mannhaupt G, Glass NL. Relationship between phylogenetic distribution and genomic features in Neurospora crassa. PLoS One. 2009 Apr 21;4(4):e5286. doi: 10.1371/journal.pone.0005286. PMID: 19461939; PMCID: PMC2684829.
The Saccharomyces cerevisiae PRM1 homolog in Neurospora crassa is involved in vegetative and sexual cell fusion events but also has postfertilization functions
Fleissner A, Diamond S, Glass NL. The Saccharomyces cerevisiae PRM1 homolog in Neurospora crassa is involved in vegetative and sexual cell fusion events but also has postfertilization functions. Genetics. 2009 Feb;181(2):497-510. doi: 10.1534/genetics.108.096149. Epub 2008 Dec 8. PMID: 19064710; PMCID: PMC2644943.
2008
Cell fusion in the filamentous fungus, Neurospora crassa
Fleissner A, Simonin AR, Glass NL. Cell fusion in the filamentous fungus, Neurospora crassa. Methods Mol Biol. 2008;475:21-38. doi: 10.1007/978-1-59745-250-2_2. PMID: 18979236.
Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches
Kasuga T, Glass NL. Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches. Eukaryot Cell. 2008 Sep;7(9):1549-64. doi: 10.1128/EC.00195-08. Epub 2008 Aug 1. PMID: 18676954; PMCID: PMC2547062.
Increased resistance of complex I mutants to phytosphingosine-induced programmed cell death
Castro A, Lemos C, Falcão A, Glass NL, Videira A. Increased resistance of complex I mutants to phytosphingosine-induced programmed cell death. J Biol Chem. 2008 Jul 11;283(28):19314-21. doi: 10.1074/jbc.M802112200. Epub 2008 May 12. PMID: 18474589; PMCID: PMC2443650.
Lack of the GTPase RHO-4 in Neurospora crassa causes a reduction in numbers and aberrant stabilization of microtubules at hyphal tips
Rasmussen CG, Morgenstein RM, Peck S, Glass NL. Lack of the GTPase RHO-4 in Neurospora crassa causes a reduction in numbers and aberrant stabilization of microtubules at hyphal tips. Fungal Genet Biol. 2008 Jun;45(6):1027-39. doi: 10.1016/j.fgb.2008.02.006. Epub 2008 Feb 29. PMID: 18387834.
A novel gene, phcA from Pseudomonas syringae induces programmed cell death in the filamentous fungus Neurospora crassa
Wichmann G, Sun J, Dementhon K, Glass NL, Lindow SE. A novel gene, phcA from Pseudomonas syringae induces programmed cell death in the filamentous fungus Neurospora crassa. Mol Microbiol. 2008 May;68(3):672-89. doi: 10.1111/j.1365-2958.2008.06175.x. Epub 2008 Mar 20. PMID: 18363647.
2007
Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons
Tian C, Kasuga T, Sachs MS, Glass NL. Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons. Eukaryot Cell. 2007 Jun;6(6):1018-29. doi: 10.1128/EC.00078-07. Epub 2007 Apr 20. PMID: 17449655; PMCID: PMC1951524.
Localization of RHO-4 indicates differential regulation of conidial versus vegetative septation in the filamentous fungus Neurospora crassa
Rasmussen CG, Glass NL. Localization of RHO-4 indicates differential regulation of conidial versus vegetative septation in the filamentous fungus Neurospora crassa. Eukaryot Cell. 2007 Jul;6(7):1097-107. doi: 10.1128/EC.00050-07. Epub 2007 May 11. PMID: 17496127; PMCID: PMC1951110.
Enabling a community to dissect an organism: overview of the Neurospora functional genomics project
Dunlap JC, Borkovich KA, Henn MR, Turner GE, Sachs MS, Glass NL, McCluskey K, Plamann M, Galagan JE, Birren BW, Weiss RL, Townsend JP, Loros JJ, Nelson MA, Lambreghts R, Colot HV, Park G, Collopy P, Ringelberg C, Crew C, Litvinkova L, DeCaprio D, Hood HM, Curilla S, Shi M, Crawford M, Koerhsen M, Montgomery P, Larson L, Pearson M, Kasuga T, Tian C, Baştürkmen M, Altamirano L, Xu J. Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. Adv Genet. 2007;57:49-96. doi: 10.1016/S0065-2660(06)57002-6. PMID: 17352902; PMCID: PMC3673015.
2006
SO, a protein involved in hyphal fusion in Neurospora crassa, localizes to septal plugs
Fleissner A, Glass NL. SO, a protein involved in hyphal fusion in Neurospora crassa, localizes to septal plugs. Eukaryot Cell. 2007 Jan;6(1):84-94. doi: 10.1128/EC.00268-06. Epub 2006 Nov 10. PMID: 17099082; PMCID: PMC1800362.
Non-self recognition and programmed cell death in filamentous fungi
Glass NL, Dementhon K. Non-self recognition and programmed cell death in filamentous fungi. Curr Opin Microbiol. 2006 Dec;9(6):553-8. doi: 10.1016/j.mib.2006.09.001. Epub 2006 Oct 10. PMID: 17035076.
VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa
Dementhon K, Iyer G, Glass NL. VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa. Eukaryot Cell. 2006 Dec;5(12):2161-73. doi: 10.1128/EC.00253-06. Epub 2006 Sep 29. PMID: 17012538; PMCID: PMC1694810.
Nonallelic interactions between het-c and a polymorphic locus, pin-c, are essential for nonself recognition and programmed cell death in Neurospora crassa
Kaneko I, Dementhon K, Xiang Q, Glass NL. Nonallelic interactions between het-c and a polymorphic locus, pin-c, are essential for nonself recognition and programmed cell death in Neurospora crassa. Genetics. 2006 Mar;172(3):1545-55. doi: 10.1534/genetics.105.051490. PMID: 16554411; PMCID: PMC1456284.
2005
A Rho-type GTPase, rho-4, is required for septation in Neurospora crassa
Rasmussen CG, Glass NL. A Rho-type GTPase, rho-4, is required for septation in Neurospora crassa. Eukaryot Cell. 2005 Nov;4(11):1913-25. doi: 10.1128/EC.4.11.1913-1925.2005. PMID: 16278458; PMCID: PMC1287859.
Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination
Kasuga T, Townsend JP, Tian C, Gilbert LB, Mannhaupt G, Taylor JW, Glass NL. Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination. Nucleic Acids Res. 2005 Nov 14;33(20):6469-85. doi: 10.1093/nar/gki953. PMID: 16287898; PMCID: PMC1283539.
The so locus is required for vegetative cell fusion and postfertilization events in Neurospora crassa
Fleissner A, Sarkar S, Jacobson DJ, Roca MG, Read ND, Glass NL. The so locus is required for vegetative cell fusion and postfertilization events in Neurospora crassa. Eukaryot Cell. 2005 May;4(5):920-30. doi: 10.1128/EC.4.5.920-930.2005. PMID: 15879526; PMCID: PMC1140088.
2004
The control of mating type heterokaryon incompatibility by vib-1, a locus involved in het-c heterokaryon incompatibility in Neurospora crassa
Xiang Q, Glass NL. The control of mating type heterokaryon incompatibility by vib-1, a locus involved in het-c heterokaryon incompatibility in Neurospora crassa. Fungal Genet Biol. 2004 Dec;41(12):1063-76. doi: 10.1016/j.fgb.2004.07.006. PMID: 15531211.
Role of a mitogen-activated protein kinase pathway during conidial germination and hyphal fusion in Neurospora crassa
Pandey A, Roca MG, Read ND, Glass NL. Role of a mitogen-activated protein kinase pathway during conidial germination and hyphal fusion in Neurospora crassa. Eukaryot Cell. 2004 Apr;3(2):348-58. doi: 10.1128/EC.3.2.348-358.2004. PMID: 15075265; PMCID: PMC387641.
Hyphal homing, fusion and mycelial interconnectedness
Glass NL, Rasmussen C, Roca MG, Read ND. Hyphal homing, fusion and mycelial interconnectedness. Trends Microbiol. 2004 Mar;12(3):135-41. doi: 10.1016/j.tim.2004.01.007. PMID: 15001190.
Chromosome rearrangements in isolates that escape from het-c heterokaryon incompatibility in Neurospora crassa
Xiang Q, Glass NL. Chromosome rearrangements in isolates that escape from het-c heterokaryon incompatibility in Neurospora crassa. Curr Genet. 2004 Jan;44(6):329-38. doi: 10.1007/s00294-003-0451-y. Epub 2003 Oct 17. PMID: 14564476.
Neurospora in temperate forests of western North America
Jacobson DJ, Powell AJ, Dettman JR, Saenz GS, Barton MM, Hiltz MD, Dvorachek WH Jr, Glass NL, Taylor JW, Natvig DO. Neurospora in temperate forests of western North America. Mycologia. 2004 Jan-Feb;96(1):66-74. PMID: 21148830.
2003
Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes
Kroken S, Glass NL, Taylor JW, Yoder OC, Turgeon BG. Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15670-5. doi: 10.1073/pnas.2532165100. Epub 2003 Dec 15. PMID: 14676319; PMCID: PMC307626.
The genome sequence of the filamentous fungus Neurospora crassa
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 2003 Apr 24;422(6934):859-68. doi: 10.1038/nature01554. PMID: 12712197.
Fatal attraction: nonself recognition and heterokaryon incompatibility in filamentous fungi
Glass NL, Kaneko I. Fatal attraction: nonself recognition and heterokaryon incompatibility in filamentous fungi. Eukaryot Cell. 2003 Feb;2(1):1-8. doi: 10.1128/EC.2.1.1-8.2003. PMID: 12582117; PMCID: PMC141178.
2002
Live-cell imaging of vegetative hyphal fusion in Neurospora crassa
Hickey PC, Jacobson D, Read ND, Glass NL. Live-cell imaging of vegetative hyphal fusion in Neurospora crassa. Fungal Genet Biol. 2002 Oct;37(1):109-19. doi: 10.1016/s1087-1845(02)00035-x. PMID: 12223195.
Identification of vib-1, a locus involved in vegetative incompatibility mediated by het-c in Neurospora crassa
Xiang Q, Glass NL. Identification of vib-1, a locus involved in vegetative incompatibility mediated by het-c in Neurospora crassa. Genetics. 2002 Sep;162(1):89-101. doi: 10.1093/genetics/162.1.89. PMID: 12242225; PMCID: PMC1462268.
Nonself recognition is mediated by HET-C heterocomplex formation during vegetative incompatibility
Sarkar S, Iyer G, Wu J, Glass NL. Nonself recognition is mediated by HET-C heterocomplex formation during vegetative incompatibility. EMBO J. 2002 Sep 16;21(18):4841-50. doi: 10.1093/emboj/cdf479. PMID: 12234924; PMCID: PMC126278.
Multilocus self-recognition systems in fungi as a cause of trans-species polymorphism
Muirhead CA, Glass NL, Slatkin M. Multilocus self-recognition systems in fungi as a cause of trans-species polymorphism. Genetics. 2002 Jun;161(2):633-41. doi: 10.1093/genetics/161.2.633. PMID: 12072460; PMCID: PMC1462126.
The ham-2 locus, encoding a putative transmembrane protein, is required for hyphal fusion in Neurospora crassa
Xiang Q, Rasmussen C, Glass NL. The ham-2 locus, encoding a putative transmembrane protein, is required for hyphal fusion in Neurospora crassa. Genetics. 2002 Jan;160(1):169-80. doi: 10.1093/genetics/160.1.169. PMID: 11805054; PMCID: PMC1461943.
2001
Identification of specificity determinants and generation of alleles with novel specificity at the het-c heterokaryon incompatibility locus of Neurospora crassa
Wu J, Glass NL. Identification of specificity determinants and generation of alleles with novel specificity at the het-c heterokaryon incompatibility locus of Neurospora crassa. Mol Cell Biol. 2001 Feb;21(4):1045-57. doi: 10.1128/MCB.21.4.1045-1057.2001. PMID: 11158292; PMCID: PMC99559.
2000
Vegetative incompatibility in the het-6 region of Neurospora crassa is mediated by two linked genes
Smith ML, Micali OC, Hubbard SP, Mir-Rashed N, Jacobson DJ, Glass NL. Vegetative incompatibility in the het-6 region of Neurospora crassa is mediated by two linked genes. Genetics. 2000 Jul;155(3):1095-104. doi: 10.1093/genetics/155.3.1095. PMID: 10880472; PMCID: PMC1461168.
The genetics of hyphal fusion and vegetative incompatibility in filamentous ascomycete fungi
Glass NL, Jacobson DJ, Shiu PK. The genetics of hyphal fusion and vegetative incompatibility in filamentous ascomycete fungi. Annu Rev Genet. 2000;34:165-186. doi: 10.1146/annurev.genet.34.1.165. PMID: 11092825.
Cell and nuclear recognition mechanisms mediated by mating type in filamentous ascomycetes
Shiu PK, Glass NL. Cell and nuclear recognition mechanisms mediated by mating type in filamentous ascomycetes. Curr Opin Microbiol. 2000 Apr;3(2):183-8. doi: 10.1016/s1369-5274(00)00073-4. PMID: 10744990.
An osmotic-remedial, temperature-sensitive mutation in the allosteric activity site of ribonucleotide reductase in Neurospora crassa
Smith ML, Hubbard SP, Jacobson DJ, Micali OC, Glass NL. An osmotic-remedial, temperature-sensitive mutation in the allosteric activity site of ribonucleotide reductase in Neurospora crassa. Mol Gen Genet. 2000 Jan;262(6):1022-35. doi: 10.1007/pl00008645. PMID: 10660063.
1998
Evidence for balancing selection operating at the het-c heterokaryon incompatibility locus in a group of filamentous fungi
Wu J, Saupe SJ, Glass NL. Evidence for balancing selection operating at the het-c heterokaryon incompatibility locus in a group of filamentous fungi. Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12398-403. doi: 10.1073/pnas.95.21.12398. PMID: 9770498; PMCID: PMC22843.
Characterization of mat A-2, mat A-3 and deltamatA mating-type mutants of Neurospora crassa
Ferreira AV, An Z, Metzenberg RL, Glass NL. Characterization of mat A-2, mat A-3 and deltamatA mating-type mutants of Neurospora crassa. Genetics. 1998 Mar;148(3):1069-79. doi: 10.1093/genetics/148.3.1069. PMID: 9539425; PMCID: PMC1460029.
Repeat-induced point mutations in Pad-1, a putative RNA splicing factor from Neurospora crassa, confer dominant lethal effects on ascus development
Kuldau GA, Raju NB, Glass NL. Repeat-induced point mutations in Pad-1, a putative RNA splicing factor from Neurospora crassa, confer dominant lethal effects on ascus development. Fungal Genet Biol. 1998 Mar;23(2):169-80. doi: 10.1006/fgbi.1998.1034. PMID: 9578630.
Molecular characterization of tol, a mediator of mating-type-associated vegetative incompatibility in Neurospora crassa
Shiu PK, Glass NL. Molecular characterization of tol, a mediator of mating-type-associated vegetative incompatibility in Neurospora crassa. Genetics. 1999 Feb;151(2):545-55. doi: 10.1093/genetics/151.2.545. PMID: 9927450; PMCID: PMC1460514.
1997
Allelic specificity at the het-c heterokaryon incompatibility locus of Neurospora crassa is determined by a highly variable domain
Saupe SJ, Glass NL. Allelic specificity at the het-c heterokaryon incompatibility locus of Neurospora crassa is determined by a highly variable domain. Genetics. 1997 Aug;146(4):1299-309. doi: 10.1093/genetics/146.4.1299. PMID: 9258675; PMCID: PMC1208076.
1996
Escape from het-6 incompatibility in Neurospora crassa partial diploids involves preferential deletion within the ectopic segment
Smith ML, Yang CJ, Metzenberg RL, Glass NL. Escape from het-6 incompatibility in Neurospora crassa partial diploids involves preferential deletion within the ectopic segment. Genetics. 1996 Oct;144(2):523-31. doi: 10.1093/genetics/144.2.523. PMID: 8889517; PMCID: PMC1207547.
The product of the het-C heterokaryon incompatibility gene of Neurospora crassa has characteristics of a glycine-rich cell wall protein
Saupe SJ, Kuldau GA, Smith ML, Glass NL. The product of the het-C heterokaryon incompatibility gene of Neurospora crassa has characteristics of a glycine-rich cell wall protein. Genetics. 1996 Aug;143(4):1589-600. doi: 10.1093/genetics/143.4.1589. PMID: 8844148; PMCID: PMC1207423.
Transcriptional analysis of the mtA idiomorph of Neurospora crassa identifies two genes in addition to mtA-1
Ferreira AV, Saupe S, Glass NL. Transcriptional analysis of the mtA idiomorph of Neurospora crassa identifies two genes in addition to mtA-1. Mol Gen Genet. 1996 Apr 10;250(6):767-74. doi: 10.1007/BF02172989. PMID: 8628238.
Mapping translocation breakpoints by orthogonal field agarose-gel electrophoresis
Smith ML, Glass NL. Mapping translocation breakpoints by orthogonal field agarose-gel electrophoresis. Curr Genet. 1996 Feb;29(3):301-5. doi: 10.1007/BF02221562. PMID: 8595678.
The molecular nature of mutations in the mt A-1 gene of the Neurospora crassa A idiomorph and their relation to mating-type function
Saupe S, Stenberg L, Shiu KT, Griffiths AJ, Glass NL. The molecular nature of mutations in the mt A-1 gene of the Neurospora crassa A idiomorph and their relation to mating-type function. Mol Gen Genet. 1996 Jan 15;250(1):115-22. doi: 10.1007/BF02191831. PMID: 8569681.
1995
Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes
Glass NL, Donaldson GC. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol. 1995 Apr;61(4):1323-30. doi: 10.1128/aem.61.4.1323-1330.1995. PMID: 7747954; PMCID: PMC167388.
Primer sets developed to amplify conserved genes from filamentous ascomycetes are useful in differentiating fusarium species associated with conifers
Donaldson GC, Ball LA, Axelrood PE, Glass NL. Primer sets developed to amplify conserved genes from filamentous ascomycetes are useful in differentiating fusarium species associated with conifers. Appl Environ Microbiol. 1995 Apr;61(4):1331-40. doi: 10.1128/aem.61.4.1331-1340.1995. PMID: 16534991; PMCID: PMC1388409.
1994
Structure and function of a mating-type gene from the homothallic species Neurospora africana
Glass NL, Smith ML. Structure and function of a mating-type gene from the homothallic species Neurospora africana. Mol Gen Genet. 1994 Aug 15;244(4):401-9. doi: 10.1007/BF00286692. PMID: 8078466.
Cloning and characterization of the pho-2+ gene encoding a repressible alkaline phosphatase in Neurospora crassa
Grotelueschen J, Peleg Y, Glass NL, Metzenberg RL. Cloning and characterization of the pho-2+ gene encoding a repressible alkaline phosphatase in Neurospora crassa. Gene. 1994 Jun 24;144(1):147-8. doi: 10.1016/0378-1119(94)90223-2. PMID: 8026754.
New mutations that suppress mating-type vegetative incompatibility in Neurospora crassa
Vellani TS, Griffiths AJ, Glass NL. New mutations that suppress mating-type vegetative incompatibility in Neurospora crassa. Genome. 1994 Apr;37(2):249-55. doi: 10.1139/g94-035. PMID: 8200515.
1993
Heterologous expression of mating-type genes in filamentous fungi
Arnaise S, Zickler D, Glass NL. Heterologous expression of mating-type genes in filamentous fungi. Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6616-20. doi: 10.1073/pnas.90.14.6616. PMID: 8341677; PMCID: PMC46983.
1992
Isolation of Neurospora crassa A mating type mutants by repeat induced point (RIP) mutation
Glass NL, Lee L. Isolation of Neurospora crassa A mating type mutants by repeat induced point (RIP) mutation. Genetics. 1992 Sep;132(1):125-33. doi: 10.1093/genetics/132.1.125. PMID: 1398049; PMCID: PMC1205111.
Mating type and vegetative incompatibility in filamentous ascomycetes
Glass NL, Kuldau GA. Mating type and vegetative incompatibility in filamentous ascomycetes. Annu Rev Phytopathol. 1992;30:201-24. doi: 10.1146/annurev.py.30.090192.001221. PMID: 18643772.
1990
Neurospora crassa A mating-type region
Glass NL, Grotelueschen J, Metzenberg RL. Neurospora crassa A mating-type region. Proc Natl Acad Sci U S A. 1990 Jul;87(13):4912-6. doi: 10.1073/pnas.87.13.4912. PMID: 2142303; PMCID: PMC54231.
Mating type and mating strategies in Neurospora
Metzenberg RL, Glass NL. Mating type and mating strategies in Neurospora. Bioessays. 1990 Feb;12(2):53-9. doi: 10.1002/bies.950120202. PMID: 2140508.
Genetic control of mating in Neurospora crassa
Glass, N.L. and Staben, C. 1990. Genetic control of mating in Neurospora crassa. Sem Dev Biol 1: 177-184.